Welcome to MAGATT’s documentation!

Marker Assisted Gene Annotation Transfert for Triticeae.

Snakemake pipeline used to transfert GFF annotation on a new assembly with a fine target mapping approach.

GitLab Repository : https://forgemia.inra.fr/umr-gdec/magatt

Test data are available for download at https://doi.org/10.57745/HHN3G5

Installation

• Dependancies and installation

Configuration

• Prepare and configure the pipeline
• Running the pipeline